Package: brainGraph
Type: Package
Version: 3.0.3
Date: 2024-02-20
Title: Graph Theory Analysis of Brain MRI Data
Authors@R: person(given="Christopher G.", family="Watson",
                  email="cgwatson@bu.edu", role=c("aut", "cre"),
                  comment=c(ORCID="0000-0002-7082-7631"))
Description: A set of tools for performing graph theory analysis of
        brain MRI data. It works with data from a Freesurfer analysis
        (cortical thickness, volumes, local gyrification index, surface
        area), diffusion tensor tractography data (e.g., from FSL) and
        resting-state fMRI data (e.g., from DPABI). It contains a
        graphical user interface for graph visualization and data
        exploration, along with several functions for generating useful
        figures.
URL: https://github.com/cwatson/brainGraph
BugReports: https://groups.google.com/forum/?hl=en#!forum/brainGraph-help
LazyData: true
Depends: R (>= 3.5.0), igraph (>= 1.2.4),
Imports: abind, data.table (>= 1.12.4), doParallel, foreach, grid,
        lattice, MASS, Matrix, methods, permute, parallel
Suggests: Hmisc, RGtk2, ade4, boot, cairoDevice, car, expm, ggplot2,
        ggrepel, gridExtra, mediation, oro.nifti, scales
License: GPL-3
RoxygenNote: 6.1.1
Collate: 'glm_stats.R' 'brainGraph_GLM.R' 'glm_methods.R' 'NBS.R'
        'analysis_random_graphs.R' 'atlas.R' 'auc.R' 'boot_global.R'
        'brainGraph_mediate.R' 'centr_lev.R' 'communicability.R'
        'contract_brainGraph.R' 'corr_matrix.R' 'count_edges.R'
        'create_graphs.R' 'create_mats.R' 'data.R' 'data_tables.R'
        'distances.R' 'edge_asymmetry.R' 'get_resid.R' 'glm_design.R'
        'glm_fit.R' 'glm_randomise.R' 'graph_efficiency.R' 'hubs.R'
        'import.R' 'individ_contrib.R' 'list.R' 'method_helpers.R'
        'mtpc.R' 'methods.R' 'permute_group.R' 'plot_brainGraph.R'
        'plot_brainGraph_gui.R' 'plot_brainGraph_multi.R'
        'plot_global.R' 'plot_group_means.R' 'plot_rich_norm.R'
        'plot_vertex_measures.R' 'random_graphs.R' 'rich_club.R'
        'robustness.R' 's_core.R' 'set_brainGraph_attributes.R'
        'small_world.R' 'spatial_dist.R' 'update_brainGraph_gui.R'
        'utils.R' 'utils_matrix.R' 'vertex_roles.R' 'vulnerability.R'
        'write_brainnet.R' 'zzz.R'
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://cwatson.r-universe.dev
Date/Publication: 2024-02-20 16:44:48 UTC
RemoteUrl: https://github.com/cwatson/braingraph
RemoteRef: HEAD
RemoteSha: a0d13aea831fbb708c9fb984816e9edda616bbdd
NeedsCompilation: no
Packaged: 2026-06-18 06:55:54 UTC; root
Author: Christopher G. Watson [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7082-7631>)
Maintainer: Christopher G. Watson <cgwatson@bu.edu>